I was having issues with ScanSnap Manager reordering pages when simply scanning to a file, not even to Evernote, so it's a more general issue with the older version of ScanSnap Manager. The Fujitsu site notes that users on macOS High Sierra using OCR ('Convert to Searchable PDF') for the scan setting on a Mac with an SSD will experience the issue with pages out of order, so it sounds like a common issue if you simply have the trifecta of High Sierra, a Mac with SSD, and the older version of ScanSnap Manager.īRILLIANT! I have been driving myself crazy with this, thinking that I was doing something wrong or differently with the settings. I had the same experience as Jason E - the newer version fixed the problem and improved OCR speeds a lot! You do have to download the ScanSnap Manager v6.3L50 software, and then manually download and apply the additional listed updates (v6.3L61 and v6.3L70 as of this writing) to get fully up to date. I am on High Sierra 10.13.2 using a ScanSnap S1500, and this resolved my issue. The solution is upgrading to the latest ScanSnap Manager v6.3L70.
However, after some digging I found the following from Fujitsu:
I too was pulling my hair out with this same issue of the random page order and was finding very little on the issue.